Table 2 Top 10 genes upregulated in EC relative to NEC
Gene | Control | Observed effect | logFC | PValue | FDR | Functional domains (descriptions) | Functional domains (domain name) | Athaliana_Defline | Ghirsutum_Defline |
|---|---|---|---|---|---|---|---|---|---|
Gohir.D11G247300.1 | NEC | EC | 12.2179854 | 2.64E-60 | 2.44E-56 | Nodulin_late | Nodulin_late | Â | Â |
Gohir.A09G068700.1 | NEC | EC | 11.0311639 | 2.26E-16 | 1.41E-14 | DUF3963 | DUF3963 | Â | Â |
Gohir.A03G181200.1 | NEC | EC | 10.8541708 | 5.80E-67 | 1.34E-62 | #N/A | #N/A | Â | Â |
Gohir.A05G291150.1 | NEC | EC | 10.7942425 | 2.50E-24 | 5.12E-22 | DUF4912 | DUF4912 | Â | Â |
Gohir.A09G187300.1 | NEC | EC | 10.6509234 | 1.66E-19 | 1.72E-17 | #N/A | #N/A | Â | Â |
Gohir.A11G045350.1 | NEC | EC | 10.6244362 | 0.00116229 | 0.00472295 | #N/A | #N/A | Â | Â |
Gohir.D12G136400.1 | NEC | EC | 10.6014584 | 6.50E-05 | 0.0003752 | #N/A | #N/A | Â | Â |
Gohir.A08G165050.1 | NEC | EC | 10.5716199 | 1.71E-34 | 1.16E-31 | #N/A | #N/A | Â | Â |
Gohir.A07G162000.3 | NEC | EC | 10.488521 | 1.52E-25 | 3.68E-23 | #N/A | #N/A | Â | Â |
Gohir.D11G067750.1 | NEC | EC | 10.3328265 | 7.12E-05 | 0.00040677 | #N/A | #N/A | Â | Â |
Gohir.D04G048900.1 | NEC | EC | −9.94544461036326 | 1.19E-12 | 3.79E-11 | GASA | GASA | GASR7 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed; GAST1 protein homolog 4 | GAST1 protein homolog 4 |
Gohir.A09G040900.1 | NEC | EC | −9.974189713011 | 0.0001288 | 0.0006863 | #N/A | #N/A |  |  |
Gohir.D06G144900.2 | NEC | EC | −9.98990989847144 | 1.08E-39 | 1.16E-36 | #N/A | #N/A |  |  |
Gohir.D10G179800.1 | NEC | EC | −10.4131140476177 | 5.93E-22 | 8.57E-20 | VanY | VanY |  |  |
Gohir.D05G002150.1 | NEC | EC | −10.4414002634445 | 0.00169419 | 0.00655082 | #N/A | #N/A |  |  |
Gohir.A11G280900.1 | NEC | EC | −10.675999492066 | 9.84E-05 | 0.00054239 | Phage_holin_3_7 | Phage_holin_3_7 |  |  |
Gohir.D13G226251.1 | NEC | EC | −10.6995332832501 | 0.00118551 | 0.00480505 | #N/A | #N/A |  |  |
Gohir.D05G008300.1 | NEC | EC | −11.6191438066039 | 7.96E-05 | 0.00044992 | AdoMetDC_leader | AdoMetDC_leader | S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed; conserved peptide upstream open reading frame 9 | conserved peptide upstream open reading frame 9 |
Gohir.D07G179500.2 | NEC | EC | −11.6654565629349 | 0.00012965 | 0.00069003 | DVL | DVL | expressed protein; ROTUNDIFOLIA like 21 | ROTUNDIFOLIA like 21 |
Gohir.D08G229750.1 | NEC | EC | −12.7143630581706 | 1.18E-53 | 5.45E-50 | Ribosomal_L18A, DUF1891 | Ribosomal_L18A, DUF1891 | 60S ribosomal protein L18a, putative, expressed; Ribosomal protein L18ae/LX family protein | Ribosomal protein L18ae/LX family protein |