Table 2 Statistics summary of small RNA annotation
Samples | Clean_reads | rRNA | snRNA | snoRNA | tRNA | Repbase | Unannotated |
|---|---|---|---|---|---|---|---|
Ov1A | 12,683,518 (100.00%) | 2,656,487 (20.94%) | 0 (0.00%) | 4189 (0.03%) | 49,625 (0.39%) | 6701 (0.05%) | 9,966,516 (78.58%) |
Ov1B | 12,527,184 (100.00%) | 2,775,092 (22.15%) | 1 (0.00%) | 4228 (0.03%) | 44,277 (0.35%) | 6702 (0.05%) | 9,696,884 (77.41%) |
Ov1C | 11,141,617 (100.00%) | 3,637,501 (32.65%) | 0 (0.00%) | 4091 (0.04%) | 40,670 (0.37%) | 6319 (0.06%) | 7,453,036 (66.89%) |
Ov2A | 17,229,692 (100.00%) | 3,935,661 (22.84%) | 0 (0.00%) | 42,156 (0.24%) | 430,011 (2.50%) | 15,635 (0.09%) | 12,806,229 (74.33%) |
Ov2B | 12,897,793 (100.00%) | 2,731,975 (21.18%) | 2 (0.00%) | 39,227 (0.30%) | 305,727 (2.37%) | 19,391 (0.15%) | 9,801,471 (75.99%) |
Ov2C | 21,644,782 (100.00%) | 4,207,691 (19.44%) | 0 (0.00%) | 50,788 (0.23%) | 404,254 (1.87%) | 18,606 (0.09%) | 16,963,443 (78.37%) |
Ov3A | 12,505,770 (100.00%) | 3,726,345 (29.80%) | 0 (0.00%) | 2458 (0.02%) | 131,987 (1.06%) | 5250 (0.04%) | 8,639,730 (69.09%) |
Ov3B | 11,035,759 (100.00%) | 2,947,478 (26.71%) | 1 (0.00%) | 1340 (0.01%) | 179,619 (1.63%) | 2090 (0.02%) | 7,905,231 (71.63%) |
Ov3C | 11,951,583 (100.00%) | 2,187,876 (18.31%) | 0 (0.00%) | 1583 (0.01%) | 174,552 (1.46%) | 3021 (0.03%) | 9,584,551 (80.19%) |
Ov4A | 13,367,757 (100.00%) | 4,844,278 (36.24%) | 0 (0.00%) | 1191 (0.01%) | 144,594 (1.08%) | 2226 (0.02%) | 8,375,468 (62.65%) |
Ov4B | 14,629,060 (100.00%) | 6,913,343 (47.26%) | 2 (0.00%) | 2142 (0.01%) | 107,481 (0.73%) | 3720 (0.03%) | 7,602,372 (51.97%) |
Ov4C | 13,162,553 (100.00%) | 5,559,768 (42.24%) | 0 (0.00%) | 2637 (0.02%) | 114,188 (0.87%) | 10,763 (0.08%) | 7,475,197 (56.79%) |
Total | 164,777,068 (100%) | 46,123,495 (27.99%) | 6 (0.00%) | 156,030 (0.09%) | 2,126,985 (1.29%) | 100,424 (0.06%) | 116,270,128 (70.56%) |