Fig. 6
From: Sox7 is dispensable for primitive endoderm differentiation from mouse ES cells
Microarray analysis of XEN-like cells with or without Sox7. (a, b) Scatter plots showing gene expression of ES cells (in X-axis) and XEN-like cells (in Y axis). The value is mean of log intensity from three replicates. Probes more than 2 fold change with FDR < 0.05 are shown. (c, d) Venn diagram showing the number of the probes which are over-lapped with each genotype. (e, f) Scatter plots created from the gene list (Additional file 2) identified in (c) and (d), respectively. Each probes was plotetted according to their gene symbol and Sox7 (+/−) specific are shown in red and Sox7 (−/−) are in blue. Greens in (f) show probes expresssed more than 3 fold. The value in both axis is mean of log intensity from three replicates. (g) The result of GO term analysis of biological process by using Sox7 (+/−) 79 probes in (c). Top four from the lowest p-value GO terms are shown. IN1-D: Sox7 (+/−) ES cells; IN1 + D: Sox7 (+/−) XEN-like cells; IN6-D; Sox7 (−/−) ES cells; IN6 + D; Sox7 (−/−) XEN-like cells