From: Transcriptional analysis of early lineage commitment in human embryonic stem cells
Gene Symbol | Accession number | Gene Name | fold change P7 V P4 | B 7V4 | fold change P7 V P5 | B 7V5 | fold change P7 V P6 | B 7V6 |
---|---|---|---|---|---|---|---|---|
ACVR2B | NM_001106 | activin A receptor, type IIB | 0.89 | -5.4 | 1.37 | -2.7 | 2.83 | 2.6 |
ADM | NM_001124 | adrenomedullin | 8.82 | 8.2 | 4.23 | 4.0 | 2.55 | 1.1 |
AFP | NM_001134 | alpha-fetoprotein | 1.61 | 1.8 | 2.06 | 1.7 | 1.88 | 0.4 |
BNC2 | AK001099 | Homo sapiens cDNA FLJ10237 fis, clone HEMBB1000438. | 6.54 | 7.1 | 6.96 | 3.8 | 1.90 | 4.3 |
CALB1 | NM_004929 | calbindin 1, 28 kDa | 9.32 | 3.3 | 6.36 | 5.5 | 2.48 | 4.6 |
CCNA2 | NM_001237 | cyclin A2 | 2.75 | 7.9 | 2.04 | 1.9 | 1.46 | 0.8 |
CCNE1 | M74093 | cyclin E1 | 1.98 | 7.6 | 1.43 | 0.8 | 1.15 | -1.7 |
CD9 | AK025016 | Homo sapiens cDNA: FLJ21363 fis, clone COL02986 | 1.52 | 4.9 | 1.51 | 0.0 | 1.35 | -3.8 |
CDH6 | NM_004932 | cadherin 6, type 2, K-cadherin (fetal kidney) | 0.36 | 2.8 | 0.43 | 3.9 | 0.39 | 3.5 |
CEBPZ | NM_005760 | CCAAT-box-binding transcription factor | 6.15 | 0.7 | 2.68 | 0.6 | 1.32 | -5.6 |
COL4A6 | U04845 | collagen, type IV, alpha 6 | 0.36 | 5.2 | 0.44 | 3.8 | 0.47 | 4.0 |
CRI1 | NM_014335 | CREBBP/EP300 inhibitory protein 1 | 2.35 | 2.5 | 2.39 | 2.3 | 2.83 | 4.4 |
CRYM | NM_001888 | crystallin, mu | 4.96 | 9.6 | 2.68 | 0.8 | 1.37 | -3.5 |
CSPG2 | NM_004385 | chondroitin sulfate proteoglycan 2 (versican) | 2.50 | 7.0 | 2.10 | -1.1 | 2.85 | 2.1 |
CSPG6 | NM_005445 | chondroitin sulfate proteoglycan 6 (bamacan) | 3.76 | 5.0 | 1.99 | 3.9 | 2.81 | 1.3 |
CTCF | NM_006565 | CCCTC-binding factor (zinc finger protein) | 1.61 | -3.2 | 1.73 | 1.1 | 1.15 | -3.3 |
DKFZP586A0522 | AF113007 | DKFZP586A0522 protein | 5.35 | 5.5 | 4.76 | 2.9 | 3.84 | 4.6 |
DKK1 | NM_012242 | dickkopf homolog 1 (Xenopus laevis) | 0.33 | -0.6 | 0.36 | 5.0 | 0.43 | 3.6 |
DNMT3B | NM_006892 | DNA (cytosine-5-)-methyltransferase 3 beta | 3.14 | 4.7 | 2.68 | 0.9 | 1.97 | 1.1 |
DPPA4 | NM_018189 | developmental pluripotency associated 4 | 7.52 | 8.3 | 5.62 | 3.0 | 2.77 | 2.3 |
EDN1 | NM_001955 | endothelin 1 | 0.45 | 1.4 | 0.72 | 1.2 | 0.97 | -6.7 |
EDNRB | NM_000115 | endothelin receptor type B | 3.05 | 6.9 | 2.27 | 0.3 | 1.30 | -1.1 |
FBLN1 | NM_006485 | fibulin 1 | 0.37 | 5.0 | 0.43 | 2.9 | 0.60 | 1.1 |
FGFR1 | AK001052 | Homo sapiens cDNA FLJ10190 fis, clone HEMBA1004753. | 0.67 | 1.2 | 0.65 | -1.5 | 0.59 | 1.8 |
FGFR3 | NM_000142 | fibroblast growth factor receptor 3 (achondroplasia, thanatophoric dwarfism) | 0.39 | 2.3 | 0.37 | 3.6 | 0.42 | 3.0 |
FLJ10036 | NM_017975 | hypothetical protein FLJ10036 (zwilch) | 4.38 | 3.5 | 2.57 | 2.3 | 2.62 | 4.0 |
FLJ12787 | AK022849 | hypothetical protein FLJ12787 (Src-associated protein SAW) | 3.16 | 6.3 | 2.04 | 1.9 | 1.34 | 1.6 |
FLT1 | NM_002019 | fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) | 4.23 | 2.0 | 3.10 | 3.4 | 1.67 | 3.5 |
FST | NM_006350 | follistatin | 0.22 | 4.9 | 0.31 | -0.5 | 0.42 | 0.9 |
FZD7 | NM_003507 | frizzled homolog 7 (Drosophila) | 3.76 | 2.0 | 1.71 | -2.1 | 1.23 | -5.5 |
GOLGB1 | NM_004487 | golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1 | 2.10 | 6.2 | 1.77 | 1.6 | 2.83 | 2.6 |
GPC4 | NM_001448 | glypican 4 | 2.93 | 6.6 | 2.68 | 3.1 | 1.81 | 2.1 |
GREM1 | NM_013372 | cysteine knot superfamily 1, BMP antagonist 1 | 0.57 | -2.5 | 0.26 | 6.0 | 0.49 | 1.8 |
HAT1 | NM_003642 | histone acetyltransferase 1 | 6.02 | 3.9 | 2.35 | 0.7 | 1.17 | -6.0 |
HELLS | AK021443 | Homo sapiens cDNA FLJ11381 fis, clone HEMBA1000501. | 6.87 | 7.3 | 6.63 | 2.1 | 5.24 | 1.9 |
HESX1 | NM_003865 | homeo box (expressed in ES cells) 1 | 2.30 | 5.5 | 1.25 | -3.0 | 0.68 | -0.8 |
HSPCA | D87666 | heat shock 90 kDa protein 1, alpha | 4.14 | 0.7 | 2.71 | 0.6 | 2.62 | 5.4 |
HSPCB | NM_007355 | heat shock 90 kDa protein 1, beta | 3.71 | 1.6 | 2.04 | 3.2 | 3.63 | 2.3 |
KDR | AF035121 | kinase insert domain receptor (a type III receptor tyrosine kinase) | 2.53 | 4.8 | 1.94 | 0.1 | 1.94 | 1.9 |
LHX2 | NM_004789 | LIM homeobox 2 | 0.04 | 6.1 | 0.17 | 0.5 | 0.48 | 1.1 |
LIFR | NM_002310 | leukemia inhibitory factor receptor | 1.91 | 1.2 | 1.71 | 1.8 | 2.38 | 1.1 |
LOC57146 | NM_020422 | promethin | 1.93 | 4.4 | 2.35 | 1.1 | 4.23 | 3.2 |
MSX1 | NM_002448 | msh homeo box homolog 1 (Drosophila) | 0.16 | 6.5 | 0.20 | 1.3 | 0.38 | 0.9 |
NUP54 | NM_017426 | nucleoporin 54 kDa | 4.17 | 3.5 | 1.96 | 1.3 | 1.01 | -7.3 |
OPTC | NM_014359 | opticin | 4.79 | 3.2 | 4.11 | 0.4 | 2.62 | 0.6 |
PAX6 | NM_001604 | paired box gene 6 (aniridia, keratitis) | 0.04 | 3.5 | 0.13 | 0.9 | 0.29 | 2.5 |
PB1 | NM_018165 | polybromo 1 | 1.45 | 1.8 | 1.54 | -0.4 | 2.23 | 1.7 |
PODXL | NM_005397 | podocalyxin-like | 7.31 | 4.9 | 2.22 | 0.6 | 1.38 | -3.8 |
SAS10 | NM_020368 | disrupter of silencing 10 | 3.20 | 6.4 | 3.58 | 2.6 | 3.20 | 3.4 |
SCAMP3 | NM_005698 | secretory carrier membrane protein 3 | 0.48 | 2.9 | 0.51 | 1.4 | 0.57 | 2.0 |
SDFR1 | NM_012428 | stromal cell derived factor receptor 1 | 3.66 | 6.1 | 2.50 | 0.0 | 1.51 | -0.8 |
SFRP1 | NM_003012 | secreted frizzled-related protein 1 | 3.97 | 3.3 | 2.99 | 1.7 | 1.85 | -1.4 |
SLIT1 | NM_003061 | slit homolog 1 (Drosophila) | 0.29 | 2.6 | 0.40 | 1.5 | 0.69 | 0.8 |
SMARCA2 | NM_003070 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 | 4.72 | 6.8 | 3.58 | -0.3 | 2.50 | 1.1 |
SMO | NM_005631 | smoothened homolog (Drosophila) | 0.32 | 5.4 | 0.33 | 2.5 | 0.43 | 2.4 |
SOX1 | NM_005986 | SRY (sex determining region Y)-box 1 | 2.69 | 0.9 | 1.34 | -2.7 | 1.70 | 0.6 |
STEAP2 | AK026813 | six transmembrane epithelial antigen of prostate 2 | 4.72 | 9.4 | 2.73 | 1.2 | 2.85 | 3.5 |
T | NM_003181 | T, brachyury homolog (mouse) | 1.04 | -7.3 | 0.98 | -7.3 | 1.01 | -7.4 |
TERF1 | NM_017489 | telomeric repeat binding factor (NIMA-interacting) 1 | 11.31 | 4.0 | 6.50 | 4.8 | 2.04 | 3.1 |
TGFBR3 | NM_003243 | transforming growth factor, beta receptor III (betaglycan, 300 kDa) | 0.37 | 8.5 | 0.39 | 2.6 | 0.52 | 1.8 |
VEGFC | NM_005429 | vascular endothelial growth factor C | 0.46 | 0.7 | 0.68 | 1.5 | 0.85 | -3.7 |
ZFP42 | NM_003422 | zinc finger protein 42 (myeloid-specific retinoic acid-responsive) | 0.37 | 5.1 | 0.56 | 2.3 | 0.80 | -2.4 |